1. Sayed A.A. Musavi, Seiya Yamashita, Taisuke Fujihara, Hironori Masaka, Md. Rashedul Islam, Sangwan Kim, Takafumi Gotoh, Manabu Kawahara, Kosuke Tashiro, Nobuhiko Yamauchi. (2018)
    Analysis of differentially expressed genes and the promoters in bovine endometrium throughout estrus cycle and early pregnancy. Animal Science Journal.

  2. Shun-ichiro Takano, Midori Tuda, Keiji Takayasu, Naruto Furuya, Yuya Imamura, Sangwan Kim, Kosuke TashiroK, Kazuhiro Iiyama, Matias Tavares and Cardoso Amaral. (2017)
    Unique clade of alphaproteobacterial endosymbionts induces complete cytoplasmic incompatibility in the coconut beetle. PNAS.

  3. Mori K, Shirasawa K, Nogata H, Hirata C, Kosuke T, Habu T, Sangwan K, Himeno Shuichi, Kuhara S, Ikegami H. (2017)
    Identification of RNA1 orthologue associated with sex determination through whole genome sequencing analysis in fig ( Ficus carica L.). Nature Scientific Reports.

  4. Inoue A, Obayashi K, Sonoda Y, Nakamura A, Ueno T, Kuhara S, Tashiro K. (2016)
    Regulation of matrix metalloproteinase-1 and alpha-smooth muscle actin expression by interleukin-1 alpha and tumour necrosis factor alpha in hepatic stellate cells. Cytotechnology.

  5. Shibata M, Mekuchi M, Mori K, Muta S, Chowdhury VS, Nakamura Y, Ojima N, Saitoh K, Kobayashi T, Wada T, Inouye K, Kuhara S, Tashiro K.(2016)
    Transcriptomic features associated with energy production in the muscles of Pacific bluefin tuna and Pacific cod. Biosci Biotechnol Biochem. 29:1-11.

  6. Eguchi R, Yoshigai E, Koga T, Kuhara S, Tashiro K.(2015)
    Spatiotemporal expression of Prdm genes during Xenopus development. Cytotechnology.

  7. Nagayoshi K, Ueki T, Tashiro K, Mizuuchi Y, Manabe T, Araki H, Oda Y, Kuhara S, Tanaka M.(2014)
    Galanin plays an important role in cancer invasiveness and is associated with poor prognosis in stage II colorectal cancer. Oncol Rep. ;33(2):539-46.

  8. Yokoyama K, Ishimura R, Kariyasu T, Imai M, Nitatori T, Kuhara S, Nitta S, Takeguchi T, Matsumoto N.(2014)
    Clinical application of an automatic slice-alignment method for cardiac MR imaging. Magn Reson Med Sci. ;13(4):293-8.

  9. Hashikawa K, Yasumoto S, Nakashima K, Arakawa F, Kiyasu J, Kimura Y, Saruta H, Nakama T, Yasuda K, Tashiro K, Kuhara S, Hashimoto T, Ohshima K.(2014)
    Microarray analysis of gene expression by microdissected epidermis and dermis in mycosis fungoides and adult T-cell leukemia/lymphoma. Int J Oncol. ;45(3):1200-8.

  10. Oba T, Kusumoto K, Kichise Y, Izumoto E, Nakayama S, Tashiro K, Kuhara S, Kitagaki H.(2014)
    Variations in mitochondrial membrane potential correlate with malic acid production by natural isolates of Saccharomyces cerevisiae sake strains. FEMS Yeast Res. ;14(5):789-96.

  11. Hirakawa H, Shirasawa K, Kosugi S, Tashiro K, Nakayama S, Yamada M, Kohara M, Watanabe A, Kishida Y, Fujishiro T, Tsuruoka H, Minami C, Sasamoto S, Kato M, Nanri K, Komaki A, Yanagi T, Guoxin Q, Maeda F, Ishikawa M, Kuhara S, Sato S, Tabata S, Isobe SN.(2014)
    Dissection of the octoploid strawberry genome by deep sequencing of the genomes of Fragaria species. DNA Res. ;21(2):169-81.

  12. Ohtani K, Hirakawa H, Paredes-Sabja D, Tashiro K, Kuhara S, Sarker MR, Shimizu T.(2013)
    Unique regulatory mechanism of sporulation and enterotoxin production in Clostridium perfringens. Journal of Bacteriology.

  13. Pang X, Tashiro K, Eguchi R, Komatsu N, Sasada T, Itoh K, Kuhara S.(2013)
    Haptoglobin Proved a Prognostic Biomarker in Peripheral Blood of Patients with Personalized Peptide Vaccinations for Advanced Castration-Resistant Prostate Cancer. Biosci Biotechnol Biochem.

  14. Yoji Nakamura, Naobumi Sasaki, Masahiro Kobayashi, Nobuhiko Ojima, Motoshige Yasuike, Yuya Shigenobu, Masataka Satomi, Yoshiya Fukuma, Koji Shiwaku, Atsumi Tsujimoto, Takanori Kobayashi, Ichiro Nakayama, Fuminari Ito, Kazuhiro Nakajima, Motohiko Sano, Tokio Wada, Satoru Kuhara, Kiyoshi Inouye, Takashi Gojobori, Kazuho Ikeo.(2013)
    The First Symbiont-Free Genome Sequence of Marine Red Alga, Susabi-nori (Pyropia yezoensis). PLOS ONE. Volume 8, Issue 3, e57122.

  15. Doi K, Mori K, Tashiro K, Fujino Y, Nagayoshi Y, Hayashi Y, Kuhara S, Ohshima T.(2013)
    Draft Genome Sequence of Pediococcus lolii NGRI 0510Q(T) Isolated from Ryegrass Silage. Genome Announc. 1(1). pii: e00156-12.

  16. Porciuncula Jde O, Furukawa T, Mori K, Shida Y, Hirakawa H, Tashiro K, Kuhara S, Nakagawa S, Morikawa Y, Ogasawara W.(2013)
    Single Nucleotide Polymorphism Analysis of a Trichoderma reesei Hyper-Cellulolytic Mutant Developed in Japan. Biosci Biotechnol Biochem.;77(3):534-43.

  17. Akira Takeno, Akira Okamoto, Keizo Tori, Kenshiro Oshima, Hideki Hirakawa, Hidehiro Toh, Norio Agata, Keiko Yamada, Naotake Ogasawara, Tetsuya Hayashi, Tohru Shimizu, Satoru Kuhara, Masahira Hattori, and Michio Ohta. (2012)
    Complete Genome Sequence of Bacillus cereus NC7401, Which Produces High Levels of the Emetic Toxin Cereulide. Journal of Bacteriology.: 194, 17, 4767-4768.

  18. Nitta M, Furukawa T, Shida Y, Mori K, Kuhara S, Morikawa Y, Ogasawara W. (2012)
    A new Zn(II)(2)Cys(6)-type transcription factor BglR regulates β-glucosidase expression in Trichoderma reesei. Fungal Genet Biol.;49(5):388-97.

  19. Hurley D, Araki H, Tamada Y, Dunmore B, Sanders D, Humphreys S, Affara M, Imoto S, Yasuda K, Tomiyasu Y, Tashiro K, Savoie C, Cho V, Smith S, Kuhara S, Miyano S, Charnock-Jones DS, Crampin EJ, Print CG. (2012)
    Gene network inference and visualization tools for biologists: application to new human transcriptome datasets. Nucleic Acids Res.;40(6):2377-98.

  20. Matsuzawa T; Mori K., Kadowaki T ., Shimada, M., Tashiro K., Kuhara S., Inagawa H., Soma G., Takegawa K.(2012)
    Genome Sequence of Pantoea agglomerans Strain IG1. JOURNAL OF BACTERIOLOGY:194, 5: 1258-1259.

  21. Yoshida S, Arakawa F, Higuchi F, Ishibashi Y, Goto M, Sugita Y, Nomura Y, Niino D, Shimizu K, Aoki R, Hashikawa K, Kimura Y, Yasuda K, Tashiro K, Kuhara S, Nagata K, Ohshima K. (2012)
    Gene expression analysis of rheumatoid arthritis synovial lining regions by cDNA microarray combined with laser microdissection: up-regulation of inflammation-associated STAT1, IRF1, CXCL9, CXCL10, and CCL5. Scand J Rheumatol.;41(3):170-9.

  22. Matsuzawa T;Mori K.,Kadowaki T.,Shimada M.,Tashiro K.,Kuhara S.,Inagawa H.,Soma G.,Takegawa K. (2012)
    Genome Sequence of Pantoea agglomerans Strain IG1. JOURNAL OF BACTERIOLOGY. 194, 1258-1259,2012.03.

  23. Nobukazu Komatsu, Satoko Matsueda, Kousuke Tashiro, Tetsuya Ioji, Shigeki Shichijo, Masanori Noguchi, Akira Yamada, Atsushi Doi, Shigetaka Suekane, Fukuko MoriyaKei Matsuoka, Satoru Kuhara, Kyogo Itoh, and Tetsuro Sasada, (2011)
    Gene expression profiles in peripheral blood as a biomarker in cancer patients receiving peptide vaccination. Cancer. 15;118(12):3208-21.

  24. Futagami T, Mori K, Yamashita A, Wada S, Kajiwara Y, Takashita H, Omori T, Takegawa K, Tashiro K, Kuhara S, Goto M.,(2011)
    Genome Sequence of the White Koji Mold Aspergillus kawachii IFO 4308, Used for Brewing the Japanese Distilled Spirit Shochu. EUKARYOTIC CELL. 10, 1586-1587,2011.1.

  25. Hishigaki H, Kuhara S. (2011)
    hERGAPDbase: a database documenting hERG channel inhibitory potentials and APD-prolongation activities of chemical compounds. DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION. ;2011:bar017.

  26. Takahiro OBA, Hikaru SUENAGA, Shunichi NAKAYAMA, Shinji MITSUIKI, Hiroshi KITAGAKI, Kosuke TASHIRO and Satoru KUHARA (2011)
    Properties of a High Malic Acid-Producing Strains of Saccharomyces cerevisiae Isolated from Sake Mash. Bioscience, Biotechnology, and Biochemistry. 75(10), 2025-9.

  27. Akao T, Yashiro I, Hosoyama A, Kitagaki H, Horikawa H, Watanabe D, Akada R, Ando Y, Harashima S, Inoue T, Inoue Y, Kajiwara S, Kitamoto K, Kitamoto N, Kobayashi O, Kuhara S, Masubuchi T, Mizoguchi H, Nakao Y, Nakazato A, Namise M, Oba T, Ogata T, Ohta A, Sato M, Shibasaki S, Takatsume Y, Tanimoto S, Tsuboi H, Nishimura A, Yoda K, Ishikawa T, Iwashita K, Fujita N, Shimoi H. (2011)
    Whole-genome sequencing of sake yeast Saccharomyces cerevisiae Kyokai no. 7. DNA Res.;18(6):423-34.

  28. Miyake M, Takemasa I, Matoba R, Tanino M, Niijima S, Ikeda M, Yamamoto H, Sekimoto M, Kuhara S, Okayama T, Monden M, Matsubara K, Mori M. (2011)
    Heterogeneity of colorectal cancers and extraction of discriminator gene signatures for personalized prediction of prognosis. INTERNATIONAL JOURNAL OF ONCOLOGY.: 39, 4,: 781-789.

  29. Michio Asada, Hideki Hirakawa, Satoru Kuhara. (2011)
    Classification of Bacteria Based on the Biases of Terminal Amino Acid Residues. Protein J. 30:290-297.