Xiang Y, Utsumi Y, Koga S, Kume T, Nagai S, Yang M: Age-dependent plasticity in hydraulics and allocation of K, Si, and starch in Moso Bamboo (Phyllostachys pubescens) , Physiologia Plantarum
Plaimart, J, Phanwila, S, Saleepoch, T, Kasahara, T, Noophan, P, Chunkao, K: Removal Performance of Nitrogen and Emerging Contaminants in Full-Scale Constructed Wetlands: Case study from Thailand Japan, and the USA, EnvironmentAsia
Tokumoto Y, Katayama A: Pieris japonica (Ericaceae) Dominance and Increased Organic Horizon Inhibit Plant Establishment in Forests Altered by Deer Grazing, Ecological Research
Han SH, Carayugan MB, An JY, Youn WB, Kume T, Park BB: Evaluating stand structural and functional impacts of understory removal in forests dominated by low-nutrient specialists in South Korea, Ecological Indicators
Kawakami E, Hishi T, Katayama A: Effects of understory degradation induced by sika deer on soil microarthropods in beech forests: comparison between two different climatic conditions, European Journal of Soil Biology
Dongchuan Fu, Abe H, Zhouqiang Li, Katayama A, Fukuzawa K, Hishi T, Chiwa M: Effects of understory vegetation loss by deer over-browsing on plant nitrogen uptake, soil nitrogen mineralization, and nitrate leaching in Japanese cool-temperate forests, Trees, Forests and People
Dongchuan Fu, Chiwa M: Differences in Soil Solution Chemistry and Their Vertical Variation Between Moso Bamboo Forests and Japanese Cedar Plantations in Western Japan, Forests
Han SH, An GY, Hernande JO, Seo JM, Youn WB, Kume T, BB Prak. : Enhancing Weeding Strategy for Pinus thunbergii Plantation in South Korea: Impacts of Timing and Frequency on the Growth Parameters, Trees, Forests and People
Abe H, Kume T, Katayama A, : Soil respiration and heterotrophic respiration in a cool-temperate forest with sika deer-induced alteration of understory vegetation, Journal of Agricultural Meteorology
Jeong Seonghun， Li Yuzhu， Kamitani R, Chiwa M，Otsuki K: Naturally grown understory vegetation after thinning reduces throughfall erosivity in Japanese coniferous plantations, Journal of Agricultural Meteorology
Ueyama M., Takao Y., Kume T， 他: The JapanFlux2024 dataset for eddy covariance observations covering Japan and East Asia from 1990 to 2023, Earth Syst. Sci. Data,
Kume T, Lin PH, Orrego M, Chung MH, Laplace S,Han SH (2025) Inconsistent interannual variations between net primary production and soil CO2 effluxes in a Moso bamboo forest, JOURNAL OF FOREST RESEARCH, 30(3): 234-241. https://doi.org/10.1080/13416979.2024.2440993
Li ZQ, Li YD, Fu DC, Chiwa M, Wondzell S, Kasahara T (2025) Organic matter decomposition in a forest mountain stream with a sediment control dam in Japan, JOURNAL OF FOREST RESEARCH, https://doi.org/10.1080/13416979.2025.2485371
Nakamura M, Terada C, Ito K, Hiura T, Shibata H, Miki T, Saitoh TM, Takagi M, Hougen T, Matsuzaki SS, Watanabe M, Tado H, Hotta N, Kosugi Y, Aiko N, Kojima N, Katagiri N, Kishimoto K, Yoshida T, Tsunoda Y, Takamiya T, Ito K, Utsumi Y, Yoshikawa T, Kenta T, Oda M, Agetsuma N, Kawai M, Fujita T, Hishi T, Shimada H, Ichie T, Hoshizaki K, Kobayashi H, Seino T, Noguchi M, Nagamatsu D, Saito H, Tateno R, Ishihara MI, Kitagawa Y, Hisamoto Y, Homma K, Hirao T, Otani T, Toda M, Terada J, Kume T, Fukuzawa K, Takashima A, Kurose K, Fujii S, Itoh S, Ohta T, Otsuki K, Nagaike T, Hasegawa K, Makoto K, Shirahata M, Matsuki S, Hatanaka M, Suzuki S, Muro N, Yamoto T, Adachi N, Kaneko N, Yamashita T (2025) Physiological profiling of the soil microbe community using the EcoPlate and assessment of soil properties at 74 planted forest sites across Japan, ECOLOGICAL RESEARCH, 40(2): 228-242. https://doi.org/10.1111/1440-1703.12506
Takeshige R, Htoo KK, Onishi M, Rahman FM, Hoshizaki K, Ida H, Ishihara MI, Itoh A, Kaneko T, Katayama A, Kuramoto S, Kurokawa H, Maki M, Masaka K, Nakaji T, Nakamura M, Nishimura N, Noguchi M, Sakai A, Takashima A, Tashiro N, Tokuchi N, Yamagawa H, Onoda Y (2025) High-resolution digital canopy height models, terrain models, ortho-mosaic photos, and canopy tree crown shapes derived from UAV-borne LiDAR at 22 tree census plots across Japanese natural forests, Ecological Research. https://doi.org/10.1111/1440-1703.12555
Orita T, Hishi T, Kishimoto-Yamada K, Kurokawa H, Ohta M, Hyodo F (2025) Abiotic factors and plant traits affect the soil microbial properties in forests across the Japanese archipelago, Ecological Research. https://doi.org/10.1111/1440-1703.12552
Abe H, Fu D, Sato T, Tokumoto Y, Hyodo F, Katayama A (2024) Protection of understory vegetation by deer exclosure fences prevent the reduction of beech growth due to soil erosion., Journal of environmental management, 371: 1234146
Ding N, Yu W, Mo J, Rehman F, Kasahara T, Guo J (2024) Does exposure timing of macrolide antibiotics affect the development of river periphyton? Insights into the structure and function., Aquatic toxicology, 275: 107070
Uemori K, Hishi T (2024) Differences in sampling efficiency of each insect order in yellow pan traps with installation of flight interception windows, Entomological Science, 27(4): e12591
Abe H, Kume T, Katayama A (2024) Sensitivities of soil respiration and heterotrophic respiration to temperature in a cool-temperate forest with sika deer-induced understory vegetation alteration, EarthArXiv
Jeong S, Nanko K, Katayama A, Kume T, Koga S, Otsuki K (2024) Characteristics of throughfall kinetic energy in an unmanaged Japanese cypress plantation laden with dead branches, CATENA, 243: 108181
Tokumoto Y, Sakurai Y, Abe H, Katayama A (2024) Effects of deer-exclusion fences on soil microbial communities through understory environmental changes in a cool temperate deciduous forest in Southern Japan, FOREST ECOLOGY AND MANAGEMENT, 564: 121993
Abe H, Kume T, Katayama A (2024) Reduction in forest carbon stocks by sika deer-induced stand structural alterations, Forest Ecology and Management, 562: 121938
Li ZQ, Fu DC, Kasahara T, Chiwa M (2024) Long-term Changes in Sulfate and Nitrate Concentrations in Streams in Western Japan Between 1986 and 2023 in Response to Changes in Sulfur and Nitrogen Deposition from the Atmosphere, WATER AIR AND SOIL POLLUTION, 235(6): 410
Liu YY, Chiwa M (2024) Influence of surface soil chemistry on nutrient leaching from Japanese cedar plantations and natural forests, LANDSCAPE AND ECOLOGICAL ENGINEERING, 20(2): 187-194
Abe H, Kume T, Hyodo F, Oyamada M, Katayama A (2024) Soil erosion under forest hampers beech growth: Impacts of understory vegetation degradation by sika deer, CATENA, 234: 107559
Tokumoto Y, Katayama A (2024) Effects of Pieris japonica (Ericaceae) dominance on cool temperate forest altered-understory environments and soil microbiomes in Southern Japan, PLOS ONE, 19(45658): e0296692
Ichihashi R, Katayama A (2024) Aboveground biomass and structural characteristics of poisonous Pieris japonica shrub stands dominating under deer pressure, JOURNAL OF FOREST RESEARCH, 29(5): 404-408
Liu Y, Chiwa M (2024) Influence of surface soil chemistry on nutrient leaching from Japanese cedar plantations and natural forests, LANDSCAPE AND ECOLOGICAL ENGINEERING, 20(2): 187-194
Hishi T, Uemori K, Tashiro N, Nakamura T (2024) Asymmetric environmental selection on intraspecific body size in Collembola communities along an elevational gradient in northern Japan., European Journal of Soil Biology, 120: 103596
Potapov AM, Chen TW, Striuchkova AV, Alatalo JM, Alexandre D, Arbea J, Ashton T, Ashwood F, Babenko AB, Bandyopadhyaya I, Baretta CRDM, Baretta D, Barnes AD, Bellini BC, Bendjaballah M, Berg MP, Bernava V, Bokhorst S, Bokova AI, Bolger T, Bouchard M, Brito RA, Buchori D, Castaño-Meneses G, Chauvat M, Chomel M, Chow Y, Chown SL, Classen AT, Cortet J, Čuchta P, Pedrosa AMDL, De Lima ECA, Deharveng LE, Doblas Miranda E, Drescher J, Eisenhauer N, Ellers J, Ferlian O, Ferreira SSD, Ferreira AS, Fiera C, Filser J, Franken O, Fujii S, Gagnon Koudji E, Gao M, Gendreau-Berthiaume B, Gers C, Greve M, Hamra-Kroua S, Handa IT, Hasegawa M, Heiniger C, Hishi T, Holmstrup M, Homet P, Høye TT, Ivask M, Jacques B, Janion-Scheepers C, Jochum M, Joimel S, Jorge BCS, Juceviča E, Kapinga EM, Kováč Ľ, Krab EJ, Krogh PH, Kuu A, Kuznetsova N, Lam WN, Lin D, Lindo Z, Liu AWP, Lu JZ, Luciáñez MJ, Marx MT, Mawan A, McCary MA, Minor MA, Mitchell GI, Moreno D, Nakamori T, Negri I, Nielsen UN, Ochoa-Hueso R, Oliveira Filho LCI, Palacios-Vargas JG, Pollierer MM, Ponge JF, Potapov MB, Querner P, Rai B, Raschmanová N, Rashid MI, Raymond-Léonard LJ, Reis AS, Ross GM, Rousseau L, Russell DJ, Saifutdinov RA, Salmon S, Santonja M, Saraeva AK, Sayer EJ, Scheunemann N, Scholz C, Seeber J, Shaw P, Shveenkova YB, Slade EM, Stebaeva S, Sterzynska M, Sun X, Susanti WI, Taskaeva AA, Tay LS, Thakur MP, Treasure AM, Tsiafouli M, Twala MN, Uvarov AV, Venier LA, Widenfalk LA, Widyastuti R, Winck B, Winkler D, Wu D, Xie Z, Yin R, Zampaulo RA, Zeppelini D, Zhang B, Zoughailech A, Ashford O, Klauberg-Filho O, Scheu S (2024) Global fine-resolution data on springtail abundance and community structure, Scientific data, 11(1): 22
Tokumoto Y, Katayama A (2024) Effects of Pieris japonica (Ericaceae) dominance on cool temperate forest altered-understory environments and soil microbiomes in Southern Japan, PLOS ONE, 19(1): e0296692
2023
K. Matsumoto, K. Terasawa, S. Taniguchi, M. Ohashi, A. Katayama, T. Kume, A. Takashima: Spatial and seasonal variations in soil respiration in a subtropical forest in Okinawa, Japan, ECOLOGICAL RESEARCH, 38(3): 479-490
W. Ding, U. Tsunogai, F. Nakagawa, T. Sambuichi, M. Chiwa, T. Kasahara, K. Shinozuka: Stable isotopic evidence for the excess leaching of unprocessed atmospheric nitrate from forested catchments under high nitrogen saturation, BIOGEOSCIENCES, 20(3): 753-766
J. Lyu, G. Li, K. Otsuki, N. Yamanaka, Y. Wang, M. Yue, S. Du: Different transpiration and growth patterns of the black locust plantation and natural oak forest on China’s Loess Plateau, Ecohydrology, 16(4): e2523
2022
Q-W. Chen, M-J. Liu, J. Lyu, G. Li, K. Otsuki, N. Yamanaka, S. Du: Characterization of dominant factors on evapotranspiration with seasonal soil water changes in two adjacent forests in the semiarid Loess Plateau, Journal of Hydrology, 613(B): 128427
I. Mizuki, Y. Sango, K. Ishida, Y. T. Hanba, M. Chiwa, Y. Uehara, A. Kume: Effects of sex and soil water chemistry on leaf morphology and physiology of Myrica gale var. tomentosa, PLOS ONE, 17(9)
H. Abe, A. Katayama, S. Taniguchi, A. Takashima, T. Kume, K. Matsumoto: Effects of differences in aboveground dead organic matter types on the stand-scale necromass and CO2 efflux estimates in a subtropical forest in Okinawa Island, Japan, ECOLOGICAL RESEARCH, 37(5): 609-622
K. Uemori, T. Mita, T. Hishi: Differences in functional trait responses to elevation among feeding guilds of Aculeata community, Ecology and Evolution, 12(8): e9171
C-Y. Lin, T. Miki, T. Kume: Potential Factors Canceling Interannual Cycles of Shoot Production in a Moso Bamboo (Phyllostachys pubescens) Stand, FRONTIERS IN FORESTS AND GLOBAL CHANGE, 5: 913426
M. Orrego, S. Ugawa, A. Inoue, S. Laplace, T. Kume, S. Koga, T. Hishi, T. Enoki: Climate, Soil, and Plant Controls on Early-Stage Litter Decomposition in Moso Bamboo Stands at a Regional Scale, FRONTIERS IN FORESTS AND GLOBAL CHANGE, 5: 921028
T. Hishi, E. Kawakami, A. Katayama: Changes in the abundance and species diversity of Collembola community along with dwarf bamboo density gradient in a mountainous temperate forest of Japan, Applied Soil Ecology, 180: 104606
M. Kobayashi, P. H. Templer, A. Katayama, O. Seki, K. Takagi: Early snowmelt by an extreme warming event affects understory more than overstory trees in Japanese temperate forests, ECOSPHERE, 13(7): e4182
K. Hiiragi, N. Matsuo, S. Sakai, K. Kawahara, T. Ichie, K. Tanaka, D. Chung, T. Kume, M. Nakagawa.: Water uptake patterns of tropical canopy trees in Borneo: species-specific and temporal variation and relationships with aboveground traits, Tree Physiology, 42(10): 1928-1942
Y. Shinohara, T. Kume: Changes in the factors contributing to the reduction of landslide fatalities between 1945 and 2019 in Japan, Science of Total Environment, 827: 154392
AD. del Campo, K. Otsuki, Y. Serengil, J. A. Blanco, R. Yousefpour, X. Wei: A global synthesis on the effects of thinning on hydrological processes: Implications for forest management, Forest Ecology and Management, 519: 120324
T. Kasahara, Y. Li, A. Tanaka.: Effects of dams and reservoirs on organic matter decomposition in the hyporheic zone in forest mountain streams, HYDROBIOLOGIA, 849: 2949-2965
M. Nakamura, C. Terada, K. Ito, K. Matsui, S. Niwa, M. Ishihara, K. Tanaka, T. Yoshikawa, T. Kadoya, T. Hiura, H. Muraoka, K. Ishida, N. Agetsuma, R. Nakamura, H. Sakio, M. Takagi, A. S. Mori, M. K. Kimura, H. Kurokawa, T. Enoki, T. Seino, A. Takashima, H. Kobayashi, K. Matsumoto, K. Takahashi, R. Tateno, T. Yoshida, T. Nakaji, M. Maki, K. Kobayashi, K. Fukuzawa, K. Hoshizaki, K. Ohta, K. Kobayashi, M. Hasegawa, S. N. Suzuki, M. Sakimoto, Y. Kitagawa, A. Sakai, H. Kondo, T. Ichie, K. Kageyama, A. Hieno, S. Kato, T. Otani, Y. Utsumi, T. Kume, K. Homma, K. Kishimoto, K. Masaka, K. Watanabe, M. Toda, D. Nagamatsu, Y. Miyazaki, T. Yamashita, N. Tokuchi: Evaluating the soil microbe community-level physiological profile using EcoPlate and soil properties at 33 forest sites across Japan, ECOLOGICAL RESEARCH, 37(3): 432-445
C. Tatsumi, T. Taniguchi, S. Du, Q. Chen, N. Yamanaka, K. Otsuki, R. Tateno: Differences in the short-term responses of soil nitrogen and microbial dynamics to soil moisture variation in two adjacent dryland forests, European Journal of Soil Biology, 110: 103394
S. Jeong, T. Kume, Y. Shinohara, M. Farahnak, K. Otsuki: Application of the Reformulated Gash Analytical Model for Rainfall Interception Loss to Unmanaged High-Density Coniferous Plantations Laden with Dead Branches, Forests, 13(5): 657
E. M. Uchida, A. Katayama, Y. Yasuda, T. Enoki, K. Otsuki, S. Koga, Y. Utsumi: Age-related changes in culm respiration of Phyllostachys pubescens culms with their anatomical and morphological traits, FRONTIERS IN FORESTS AND GLOBAL CHANGE, 5: 868732
Y. Shinohara, S. Iida, T. Oda, A. Katayama, K. Tsuruta, T. Sato, N. Tanaka, M. Su, S. Laplace, Y. Kijidani, T. Kume.: Are calibrations of sap flow measurements based on thermal dissipation needed for each sample in Japanese cedar and cypress trees?, TREES – STRUCTURE AND FUNCTION, 36: 1219-1229
D. M. Costello, S. D. Tiegs, L. Boyero, C. Canhoto, K. A. Capps, M. Danger, P. C. Frost, M. O. Gessner, N. A. Griffiths, H. M. Halvorson, K. A. Kuehn, A. M. Marcarelli, T. V. Royer, D. M. Mathie, R. J. Albariño, C. P. Arango, J. Aroviita, C. V. Baxter, B. J. Bellinger, A. Bruder, F. J. Burdon, M. Callisto, A. Camacho, F. Colas, J. Cornut, V. Crespo-Pérez, W. F. Cross, A. M. Derry, M. M. Douglas, A. Elosegi, E. de Eyto, V. Ferreira, C. Ferriol, T. Fleituch, J. J. Follstad Shah, A. Frainer, E. A. Garcia, L. García, P. E. García, D. P. Giling, R. K. Gonzales-Pomar, M. A. S. Graça, H.-P. Grossart, F. Guérold, L. U. Hepp, S. N. Higgins, T. Hishi, C. Iñiguez-Armijos, T. Iwata, A. E. Kirkwood, A. A. Koning, S. Kosten, H. Laudon, P. R. Leavitt, A. L. Lemes da Silva, S. J. Leroux, C. J. LeRoy, P. J. Lisi, F. O. Masese, P. B. McIntyre, B. G. McKie, A. O. Medeiros, M. Miliša, Y. Miyake, R. J. Mooney, T. Muotka, J. Nimptsch, R. Paavola, I. Pardo, I. Y. Parnikoza, C. J. Patrick, E. T. H. M. Peeters, J. Pozo, B. Reid, J. S. Richardson, J. Rincón, G. Risnoveanu, C. T. Robinson, A. C. Santamans, G. M. Simiyu, A. Skuja, J. Smykla, R. A. Sponseller, F. Teixeira-de Mello, S. Vilbaste, V. D. Villanueva, J. R. Webster, S. Woelfl, M. A. Xenopoulos, A. G. Yates, C. M. Yule, Y. Zhang, J. A. Zwart: Global Patterns and Controls of Nutrient Immobilization on Decomposing Cellulose in Riverine Ecosystems, Global Biogeochemical Cycles, 36(3): e2021GB007163
Chang, T., Kosugi, Y., Kume, T., Katayama, A., Okumura, M., Chang, K.: Dependance of isoprene emission flux on leaf mass per area of Phyllostachys pubescens (moso bamboo), Journal of Agricultural Meteorology, 78(1): D-21-00030
Farahnak, M., Mitsuyasu, K., Ide, J., Chiwa, M., Enoki, T., Jeong, S., Otsuki, K., Shimizu, K., Kume, A.: Soil pH and divalent cations after clear-cutting on a Japanese cypress plantation, Journal of Forest Research, 1-8
Hishi, T., Urakawa, R., Saitoh, S., Maeda, Y., Hyodo, F.: Topography is more important than forest type as a determinant for functional trait composition of Collembola community, Pedobiologia, 90: 150776
Kawakami, E., Ataka, M., Kume, T., Shimono, K., Harada, M., Hishi, T., Katayama, A.: Root exudation in a sloping Moso bamboo forest in relation to fine root biomass and traits, PLOS ONE, 17(3): e0266131
Lyu, J., He, Q., Chen, Q., Cheng, R., Li, G., Otsuki, K., Yamanaka, N., Du, S: Distinct transpiration characteristics of black locust plantations acclimated to semiarid and subhumid sites in the Loess Plateau, China. Agricultural Water Management, 262: 107402
Nagano, N., Kume, T., Utsumi, Y., Tashiro, N., Otsuki, K., Chiwa, M.: Negligible Response of Transpiration to Late-Summer Nitrogen Fertilization in Japanese Oak (Quercus crispula), Nitrogen, 3(1): 76-89
Shimono, K., Katayama, A., Kume, T., Enoki, T., Chiwa, M., Hishi, T.: Differences in net primary production allocation and nitrogen use efficiency between Moso bamboo and Japanese cedar forests along a slope, Journal of Forest Research, 27(1): 28-35
2021
Katayama, A., Endo, I., Makita, N., Matsumoto, K., Kume, T., Ohashi, M.: Vertical variation in mass and CO2 efflux of litter from the ground to the 40m high canopy in a Bornean tropical rainforest, Agricultural and Forest Meteorology, 311: 108659
Nishio, S., Takada, N., Terakami, S., Takeuchi, Y., Kimura, M. K., Isoda, K., Saito, T., Iketani, H.: Genetic structure analysis of cultivated and wild chestnut populations reveals gene flow from cultivars to natural stands, Scientific Reports, 11(1): 240
Shibata, H., Ban, R., Hirano, N., Eguchi, S., Mishima, S., Chiwa, M., Yamashita, N.: Comparison of spatial and temporal changes in riverine nitrate concentration from terrestrial basins to the sea between the 1980s and the 2000s in Japan: Impact of recent demographic shifts, Environmental Pollution, 288: 117695
Chiwa, M.: Long-term changes in atmospheric nitrogen deposition and stream water nitrate leaching from forested watersheds in western Japan, Environmental Pollution, 287: 117634
Jeong, S., Otsuki, K.: Effects of tree mortality on the estimation of stemflow yield in a self-thinning coniferous plantation, Ecohydrology, 14(7): e2327
Uemori, K., Mita, T., Hishi, T.: Changes in species, functional, and phylogenetic diversity of Aculeata communities along elevational gradients in the Kyushu Central Mountains of the Japanese archipelago, Ecological research, 36(5): 778-787
Kwon, T., Shibata, H., Kepfer-Rojas, S., Schmidt, I. K., Larsen, K. S., Beier, C., Berg, B., Verheyen, K.,
博士論文
2025
Effects of Moso bamboo invasion and dwarf bamboo loss on forest nutrient leaching (モウソウチク林の侵入とスズタケの消失が森林生態系の養分溶脱に及ぼす影響)
2024
Impacts of natural disturbances on forest carbon sequestration: Perspectives from frequent typhoons and prolonged intensive deer herbivory（自然撹乱が森林の炭素隔離機能に及ぼす影響：頻発する台風及び継続するシカによる強度な植生採食の二事例）
2023
Environmental responses of Aculeata assemblages in forest ecosystems (森林生態系における有剣ハチ群集の環境応答)
Response of nitrogen cycling to atmospheric nitrogen deposition in Japanese forests（日本の森林域における大気窒素沈着に対する窒素循環の応答性に関する研究）
修士論文
2025
ササ消失による土壌浸食および人工的なリター被覆が土壌生態系に与える影響
人口規模の異なる三都市における孤立した緑地の中型土壌動物群集 ―山地林との比較―
2024
大気由来の硫黄および窒素沈着量の変化に対する渓流水質の応答
Factors influencing cellulose decomposition in forest cypress (Chamaecyparis obtuse) plantation subjected to thinning treatments along slope positions
2023
九州山岳ブナ林におけるササの消失が土壌特性および微生物呼吸に与える影響
2022
非管理高密度ヒノキ人工林における雨水配分
放棄竹林とスギ人工林からの硝酸塩溶脱量の比較：硝酸塩溶脱の抑制における植生の役割
Soil Respiration and Its Components in Response to Environmental Factors in two Phyllostachys Forests